71 lines
2.1 KiB
Bash
71 lines
2.1 KiB
Bash
# Copyright 1999-2011 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.004-r2.ebuild,v 1.3 2011/08/01 19:27:59 maekke Exp $
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EAPI=3
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inherit eutils toolchain-funcs multilib prefix
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MY_P="${PN}-v${PV}-prod-src"
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DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
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HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
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SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"
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LICENSE="PDB"
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SLOT="0"
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KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
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IUSE=""
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RDEPEND="!<app-text/html-xml-utils-5.3"
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DEPEND="${RDEPEND}
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>=sci-libs/cifparse-obj-7.025"
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S="${WORKDIR}/${MY_P}"
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src_prepare() {
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epatch \
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"${FILESDIR}"/${P}-cflags-install.patch \
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"${FILESDIR}"/${P}-gcc-4.3.patch \
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"${FILESDIR}"/${P}-Makefile.patch \
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"${FILESDIR}"/${P}-env.patch
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sed -i "s:GENTOOLIBDIR:$(get_libdir):g" \
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pdb-extract-v3.0/Makefile \
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|| die "Failed to fix libdir"
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# Get rid of unneeded directories, to make sure we use system files
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ebegin "Deleting redundant directories"
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rm -rf cif-file-v1.0 cifobj-common-v4.1 cifparse-obj-v7.0 \
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misclib-v2.2 regex-v2.2 tables-v8.0
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eend
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sed -i \
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-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
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-e "s:^\(CC=\).*:\1$(tc-getCC):g" \
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-e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \
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-e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \
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"${S}"/etc/make.* \
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|| die "Failed to fix makefiles"
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eprefixify pdb-extract-v3.0/Makefile etc/*
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}
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src_install() {
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exeinto /usr/libexec/ccp4/bin
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doexe bin/pdb_extract{,_sf} bin/extract \
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|| die "failed to install binaries"
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insinto /usr/include/rcsb
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doins include/* || die "failed to install include files"
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dodoc README* || die "failed to install docs"
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insinto /usr/share/rcsb/
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doins -r pdb-extract-data || die "failed to install data files"
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cat >> "${T}"/envd <<- EOF
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PDB_EXTRACT="${EPREFIX}/usr/share/rcsb/"
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PDB_EXTRACT_ROOT="${EPREFIX}/usr/"
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EOF
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newenvd "${T}"/envd 20pdb-extract \
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|| die "failed to install env files"
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}
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