65 lines
1.5 KiB
Bash
65 lines
1.5 KiB
Bash
# Copyright 1999-2015 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/parassign/parassign-20130522.ebuild,v 1.4 2015/04/08 18:22:13 mgorny Exp $
|
|
|
|
EAPI=5
|
|
|
|
PYTHON_COMPAT=( python2_7 )
|
|
|
|
inherit distutils-r1 python-r1
|
|
|
|
DESCRIPTION="Assign protein nuclei solely on the basis of pseudocontact shifts (PCS)"
|
|
HOMEPAGE="http://protchem.lic.leidenuniv.nl/software/parassign/registration"
|
|
SRC_URI="PARAssign_Linux_x64_86.tgz"
|
|
RESTRICT="fetch"
|
|
|
|
SLOT="0"
|
|
LICENSE="Apache-2.0"
|
|
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
|
|
IUSE=""
|
|
|
|
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
|
|
|
|
RDEPEND="${PYTHON_DEPS}"
|
|
DEPEND="${RDEPEND}
|
|
dev-python/cython[${PYTHON_USEDEP}]
|
|
dev-python/matplotlib[${PYTHON_USEDEP}]
|
|
dev-python/numpy[${PYTHON_USEDEP}]
|
|
dev-python/scientificpython[${PYTHON_USEDEP}]
|
|
sci-biology/biopython[${PYTHON_USEDEP}]
|
|
sci-libs/scipy[${PYTHON_USEDEP}]"
|
|
|
|
S="${WORKDIR}"/PARAssign_Linux_x64_86/
|
|
|
|
src_prepare() {
|
|
sed \
|
|
-e '1i#!/usr/bin/python2' \
|
|
-i code/*py || die
|
|
|
|
if use x86; then
|
|
sed \
|
|
-e "s:munkres64:munkres:g" \
|
|
-i modules/setup.py || die
|
|
elif use amd64; then
|
|
sed \
|
|
-e "s:munkres:munkres64:g" \
|
|
-i code/*py || die
|
|
fi
|
|
cd modules || die
|
|
rm *o *c || die
|
|
distutils-r1_src_prepare
|
|
}
|
|
|
|
src_compile() {
|
|
cd modules || die
|
|
distutils-r1_src_compile
|
|
}
|
|
|
|
src_install() {
|
|
python_parallel_foreach_impl python_doscript code/* || die
|
|
|
|
dodoc PARAssign_Tutorial.pdf README
|
|
|
|
cd modules || die
|
|
distutils-r1_src_install
|
|
}
|