54 lines
1.4 KiB
Bash
54 lines
1.4 KiB
Bash
# Copyright 1999-2011 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild,v 1.8 2011/05/28 13:53:28 ranger Exp $
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EAPI=3
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inherit eutils toolchain-funcs
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MY_P="${PN}.${PV}.src"
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DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file"
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HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php"
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SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.tgz"
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LICENSE="richardson"
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SLOT="0"
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KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
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IUSE=""
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RDEPEND=""
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DEPEND="${RDEPEND}
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app-arch/unzip"
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S="${WORKDIR}/${MY_P}"
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src_prepare() {
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epatch \
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"${FILESDIR}"/${PV}-LDFLAGS.patch \
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"${FILESDIR}"/${PV}-CFLAGS.patch
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}
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src_compile() {
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DICT_DIR="/usr/share/reduce"
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DICT_FILE="reduce_het_dict.txt"
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emake \
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CC="$(tc-getCC)" \
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CXX="$(tc-getCXX)" \
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OPT="${CXXFLAGS}" \
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DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FILE}" \
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|| die "make failed"
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}
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src_install() {
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dobin "${S}"/reduce_src/reduce || die
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insinto ${DICT_DIR}
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doins "${S}"/${DICT_FILE} "${S}"/reduce_wwPDB_het_dict.txt || die
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dodoc README.usingReduce.txt || die
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}
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pkg_postinst() {
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elog "To use the PDBv3 dictionary instead of PDBv2, set the environment"
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elog "variable REDUCE_HET_DICT to ${EPREFIX}/usr/share/reduce/reduce_wwPDB_het_dict.txt"
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}
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