You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
165 lines
4.1 KiB
165 lines
4.1 KiB
# Copyright 1999-2019 Gentoo Authors
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
# @ECLASS: emboss-r2.eclass
|
|
# @MAINTAINER:
|
|
# sci-biology@gentoo.org
|
|
# jlec@gentoo.org
|
|
# ted.tanberry@gmail.com
|
|
# @AUTHOR:
|
|
# Original author: Author Olivier Fisette <ofisette@gmail.com>
|
|
# Next gen author: Justin Lecher <jlec@gentoo.org>
|
|
# Next gen author: Ted Tanberry <ted.tanberry@gmail.com>
|
|
# @SUPPORTED_EAPIS: 6
|
|
# @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons).
|
|
# @DESCRIPTION:
|
|
# The inheriting ebuild must set at least EAPI=6 and provide EBO_DESCRIPTION before the inherit line.
|
|
# KEYWORDS should be set. Additionally "(R|P)DEPEND"encies and other standard
|
|
# ebuild variables can be extended (FOO+=" bar").
|
|
#
|
|
# Example:
|
|
#
|
|
# EAPI=6
|
|
#
|
|
# EBO_DESCRIPTION="applications from the CBS group"
|
|
#
|
|
# inherit emboss-r2
|
|
|
|
# @ECLASS-VARIABLE: EBO_DESCRIPTION
|
|
# @DEFAULT_UNSET
|
|
# @DESCRIPTION:
|
|
# Should be set. Completes the generic description of the embassy module as follows:
|
|
#
|
|
# EMBOSS integrated version of ${EBO_DESCRIPTION}, e.g.
|
|
#
|
|
# "EMBOSS integrated version of applications from the CBS group"
|
|
#
|
|
# Defaults to the upstream name of the module.
|
|
|
|
if [[ ! ${_EMBOSS_R2} ]]; then
|
|
|
|
case ${EAPI:-0} in
|
|
6) ;;
|
|
*) die "EAPI=${EAPI} is not supported" ;;
|
|
esac
|
|
|
|
inherit autotools flag-o-matic
|
|
|
|
EXPORT_FUNCTIONS src_prepare src_configure src_install
|
|
|
|
HOMEPAGE="http://emboss.sourceforge.net/"
|
|
LICENSE="LGPL-2 GPL-2"
|
|
|
|
SLOT="0"
|
|
IUSE="mysql pdf png postgres static-libs X"
|
|
|
|
RDEPEND="
|
|
dev-libs/expat
|
|
dev-libs/libpcre:3
|
|
sci-libs/plplot:=
|
|
sys-libs/zlib
|
|
mysql? ( dev-db/mysql-connector-c:0= )
|
|
pdf? ( media-libs/libharu:= )
|
|
png? ( media-libs/gd:2=[png] )
|
|
postgres? ( dev-db/postgresql:= )
|
|
X? ( x11-libs/libXt )"
|
|
|
|
if [[ ${PN} == embassy-* ]]; then
|
|
EMBASSY_PACKAGE=yes
|
|
# The EMBASSY package name, retrieved from the inheriting ebuild's name
|
|
EN=${PN:8}
|
|
# The full name and version of the EMBASSY package (excluding the Gentoo
|
|
# revision number)
|
|
EF="${EN^^}-${PV}"
|
|
|
|
[[ ${EBO_DESCRIPTION} ]] || die "EBO_DESCRIPTION was not set before inheriting emboss-r2.eclass"
|
|
|
|
DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}"
|
|
SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EN}-${PV}.tar.gz"
|
|
RDEPEND+=" >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]"
|
|
|
|
S="${WORKDIR}/${EF}"
|
|
fi
|
|
|
|
DEPEND="${RDEPEND}"
|
|
|
|
# @ECLASS-VARIABLE: EBO_EAUTORECONF
|
|
# @DEFAULT_UNSET
|
|
# @DESCRIPTION:
|
|
# If set, run eautoreconf from autotools.eclass after applying patches
|
|
# in emboss-r2_src_prepare.
|
|
|
|
# @FUNCTION: emboss-r2_src_prepare
|
|
# @DESCRIPTION:
|
|
# Does the following things
|
|
#
|
|
# 1. Renames configure.in to configure.ac, if possible
|
|
# 2. Calls default_src_prepare (i.e.
|
|
# applies Gentoo and user patches in EAPI>=6)
|
|
# 3. If EBO_EAUTORECONF is set, run eautoreconf
|
|
#
|
|
|
|
emboss-r2_src_prepare() {
|
|
if [[ -e configure.in ]]; then
|
|
mv configure.{in,ac} || die
|
|
fi
|
|
|
|
default
|
|
[[ ${EBO_EAUTORECONF} ]] && eautoreconf
|
|
}
|
|
|
|
# @FUNCTION: emboss-r2_src_configure
|
|
# @DESCRIPTION:
|
|
# runs econf with following options.
|
|
#
|
|
# --enable-shared
|
|
# $(use_enable static-libs static)
|
|
# $(use_with X x)
|
|
# $(use_with png pngdriver)
|
|
# $(use_with pdf hpdf)
|
|
# $(use_with mysql mysql)
|
|
# $(use_with postgres postgresql)
|
|
# --enable-large
|
|
# --without-java
|
|
# --enable-systemlibs
|
|
#
|
|
# can be appended to like econf, e.g.
|
|
# emboss-r2_src_configure --disable-shared
|
|
|
|
emboss-r2_src_configure() {
|
|
local myconf=(
|
|
--enable-shared
|
|
$(use_enable static-libs static)
|
|
$(use_with X x)
|
|
$(use_with png pngdriver "${EPREFIX}/usr")
|
|
$(use_with pdf hpdf "${EPREFIX}/usr")
|
|
$(use_with mysql mysql "${EPREFIX}/usr/bin/mysql_config")
|
|
$(use_with postgres postgresql "${EPREFIX}/usr/bin/pg_config")
|
|
--enable-large
|
|
--without-java
|
|
--enable-systemlibs
|
|
)
|
|
|
|
[[ ${EMBASSY_PACKAGE} == yes ]] && \
|
|
append-cppflags "-I${EPREFIX}/usr/include/emboss"
|
|
|
|
econf "${myconf[@]}" "$@"
|
|
}
|
|
|
|
# @FUNCTION: emboss-r2_src_install
|
|
# @DESCRIPTION:
|
|
# Installs the package into the staging area and removes
|
|
# extraneous .la files, if USE="-static-libs"
|
|
|
|
emboss-r2_src_install() {
|
|
default
|
|
|
|
# delete .la files
|
|
if ! use static-libs; then
|
|
find "${D}" -name '*.la' -delete || die
|
|
fi
|
|
}
|
|
|
|
_EMBOSS_R2=1
|
|
fi
|