gentoo-overlay/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild

# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=7

DIST_AUTHOR=AVULLO
DIST_VERSION=3.01

inherit perl-module

DESCRIPTION="Perl bindings for sci-libs/htslib"

LICENSE="Apache-2.0"
SLOT="0"
KEYWORDS="~amd64 x86"
IUSE="test"

RESTRICT="!test? ( test )"

RDEPEND="
	sci-biology/bioperl
	sci-libs/htslib:=
"
DEPEND="
	dev-perl/Module-Build
	sci-libs/htslib:=
"
BDEPEND="${RDEPEND}
	dev-perl/Module-Build
	test? ( dev-perl/Test-LeakTrace )"

PATCHES=(
	"${FILESDIR}/2.11-build_env_ldflags.patch"
	"${FILESDIR}/2.11-build_split_htslib_opts.patch"
)

src_configure() {
	local myconf="--htslib-includedir=${EPREFIX}/usr/include/htslib --htslib-libdir=${EPREFIX}/usr/$(get_libdir)"
	unset LD
	if [[ -n "${CCLD}" ]]; then
		export LD="${CCLD}"
	fi
	perl-module_src_configure
}
src_compile() {
	./Build --config optimize="${CFLAGS}" build || die
}