72 lines
1.8 KiB
Bash
72 lines
1.8 KiB
Bash
# Copyright 1999-2015 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=5
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MODULE_AUTHOR=LDS
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inherit perl-module webapp
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DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser"
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HOMEPAGE="http://gmod.org/wiki/GBrowse"
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KEYWORDS="~amd64 ~x86"
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IUSE="-minimal mysql postgres +sqlite"
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SLOT="0"
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WEBAPP_MANUAL_SLOT="yes"
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CDEPEND="!<sci-biology/GBrowse-2.44-r1
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>=sci-biology/bioperl-1.6.9
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>=dev-perl/Bio-Graphics-2.09
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>=dev-perl/GD-2.07
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>=dev-perl/CGI-Session-4.02
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dev-perl/IO-String
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dev-perl/JSON
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dev-perl/libwww-perl
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dev-perl/Statistics-Descriptive
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!minimal? (
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dev-perl/Bio-Das
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>=dev-perl/Bio-SamTools-1.20
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dev-perl/Crypt-SSLeay
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dev-perl/DB_File-Lock
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dev-perl/DBI
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mysql? ( dev-perl/DBD-mysql )
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postgres? ( dev-perl/DBD-Pg )
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sqlite? ( dev-perl/DBD-SQLite )
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dev-perl/FCGI
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dev-perl/File-NFSLock
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dev-perl/GD-SVG
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dev-perl/Net-OpenID-Consumer
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dev-perl/Net-SMTP-SSL
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)"
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# >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile
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DEPEND="dev-perl/Module-Build
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dev-perl/Capture-Tiny
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${CDEPEND}"
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RDEPEND="${CDEPEND}"
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PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch )
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src_configure() {
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webapp_src_preinst
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# myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse"
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myconf="--conf=/etc/gbrowse2"
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myconf="${myconf} --htdocs=${MY_HTDOCSDIR}"
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myconf="${myconf} --cgibin=${MY_CGIBINDIR}"
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myconf="${myconf} --tmp=/var/tmp/gbrowse2"
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myconf="${myconf} --persistent=/var/db/gbrowse2"
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myconf="${myconf} --databases=/var/db/gbrowse2/databases"
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myconf="${myconf} --installconf=no"
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myconf="${myconf} --installetc=no"
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perl-module_src_configure
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}
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src_install() {
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dodir /var/tmp/gbrowse2
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dodir /var/db/gbrowse2/sessions
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dodir /var/db/gbrowse2/userdata
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webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2
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perl-module_src_install
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webapp_src_install
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}
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