gentoo-overlay/sci-biology/eugene/eugene-4.1d.ebuild

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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit autotools
DESCRIPTION="Prokaryotic and Eukaryotic gene predictor"
HOMEPAGE="http://eugene.toulouse.inra.fr/"
SRC_URI="https://mulcyber.toulouse.inra.fr/frs/download.php/1359/${P}.tar.gz"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="amd64 x86"
IUSE=""
DEPEND="
media-libs/gd[png]
media-libs/libpng:0=
"
RDEPEND="${DEPEND}"
RESTRICT="test"
PATCHES=(
# https://mulcyber.toulouse.inra.fr/tracker/index.php?func=detail&aid=1170
"${FILESDIR}"/${PN}-3.6-overflow.patch
"${FILESDIR}"/${PN}-3.6-plugins.patch
"${FILESDIR}"/${PN}-4.1-format-security.patch
"${FILESDIR}"/${PN}-4.1d-fix-c++14.patch
"${FILESDIR}"/${PN}-4.1d-Wformat.patch
)
src_prepare() {
default
sed \
-e '/SUBDIRS/ s/doc//' \
-e '/INSTALL.*doc/ s/\(.*\)//' \
-i Makefile.am || die
eautoreconf
}