69 lines
1.9 KiB
Bash
69 lines
1.9 KiB
Bash
# Copyright 1999-2010 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.4.0_alpha.ebuild,v 1.2 2010/10/02 15:08:42 dilfridge Exp $
|
|
|
|
EAPI="3"
|
|
|
|
inherit eutils toolchain-funcs versionator
|
|
|
|
DESCRIPTION="Intelligent algorithms for DNA searches"
|
|
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
|
|
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${PN}$(delete_version_separator 3).tar.gz"
|
|
|
|
LICENSE="BSD"
|
|
SLOT="0"
|
|
IUSE="doc"
|
|
KEYWORDS="~alpha ~amd64 ~ia64 ~sparc ~x86"
|
|
|
|
RDEPEND="~sci-biology/hmmer-2.3.2"
|
|
DEPEND="
|
|
${RDEPEND}
|
|
app-shells/tcsh
|
|
dev-lang/perl
|
|
virtual/latex-base"
|
|
|
|
S="${WORKDIR}"/${PN}$(delete_version_separator 3)
|
|
|
|
src_prepare() {
|
|
epatch "${FILESDIR}"/${P}-glibc-2.10.patch
|
|
epatch "${FILESDIR}"/${P}-cflags.patch
|
|
cd "${S}"/docs
|
|
cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex
|
|
cat wise2api.tex temp.tex apiend.tex > api.tex
|
|
epatch "${FILESDIR}"/${PN}-api.tex.patch
|
|
}
|
|
|
|
src_compile() {
|
|
emake \
|
|
-C src \
|
|
CC="$(tc-getCC)" \
|
|
all || die
|
|
if use doc; then
|
|
cd "${S}"/docs
|
|
for i in api appendix dynamite wise2 wise3arch; do
|
|
latex ${i} || die
|
|
latex ${i} || die
|
|
dvips ${i}.dvi -o || die
|
|
done
|
|
fi
|
|
}
|
|
|
|
src_test() {
|
|
cd "${S}"/src
|
|
WISECONFIGDIR="${S}/wisecfg" make test || die
|
|
}
|
|
|
|
src_install() {
|
|
dobin "${S}"/src/bin/* || die "Failed to install program"
|
|
dolib.a "${S}"/src/base/libwisebase.a || die "Failed to install libwisebase"
|
|
dolib.a "${S}"/src/dynlibsrc/libdyna.a || die "Failed to install libdyna"
|
|
dobin "${S}"/src/dynlibsrc/testgendb || die "Failed to install testgendb"
|
|
dolib.a "${S}"/src/models/libmodel.a || die "Failed to install libmodel"
|
|
insinto /usr/share/${PN}
|
|
doins -r "${S}"/wisecfg || die "Failed to install wisecfg"
|
|
if use doc; then
|
|
insinto /usr/share/doc/${PF}
|
|
doins "${S}"/docs/*.ps || die "Failed to install documentation"
|
|
fi
|
|
newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file"
|
|
}
|