You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
gentoo-overlay/sci-biology/allpathslg/allpathslg-42337.ebuild

36 lines
905 B

# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.5 2013/07/17 08:33:08 jlec Exp $
EAPI=4
inherit autotools flag-o-matic
DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
IUSE=""
KEYWORDS="amd64 ~x86"
DEPEND="
dev-libs/boost
!sci-biology/allpaths
sci-biology/vaal"
RDEPEND=""
src_prepare() {
sed -i 's/-ggdb3//' configure.ac || die
eautoreconf
}
src_install() {
einstall || die
# Provided by sci-biology/vaal
for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
rm "${D}/usr/bin/$i" || die
done
}