36 lines
918 B
Bash
36 lines
918 B
Bash
# Copyright 1999-2013 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-47093.ebuild,v 1.2 2013/11/13 02:34:46 patrick Exp $
|
|
|
|
EAPI=5
|
|
|
|
inherit autotools flag-o-matic
|
|
|
|
DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
|
|
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
|
|
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
|
|
|
|
LICENSE="MIT"
|
|
SLOT="0"
|
|
IUSE=""
|
|
KEYWORDS="~amd64 -x86"
|
|
|
|
DEPEND="
|
|
dev-libs/boost
|
|
!sci-biology/allpaths
|
|
sci-biology/vaal"
|
|
RDEPEND=""
|
|
|
|
src_prepare() {
|
|
sed -i 's/-ggdb//' configure.ac || die
|
|
eautoreconf
|
|
}
|
|
|
|
src_install() {
|
|
default
|
|
# einstall || die
|
|
# Provided by sci-biology/vaal
|
|
for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
|
|
rm "${D}/usr/bin/$i" || die
|
|
done
|
|
}
|