gentoo-overlay/sci-biology/allpathslg/allpathslg-47093.ebuild

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# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-47093.ebuild,v 1.2 2013/11/13 02:34:46 patrick Exp $
EAPI=5
inherit autotools flag-o-matic
DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 -x86"
DEPEND="
dev-libs/boost
!sci-biology/allpaths
sci-biology/vaal"
RDEPEND=""
src_prepare() {
sed -i 's/-ggdb//' configure.ac || die
eautoreconf
}
src_install() {
default
# einstall || die
# Provided by sci-biology/vaal
for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
rm "${D}/usr/bin/$i" || die
done
}