112 lines
2.5 KiB
Bash
112 lines
2.5 KiB
Bash
# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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PYTHON_COMPAT=( python2_7 )
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DISTUTILS_OPTIONAL=true
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AUTOTOOLS_AUTORECONF=true
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AUTOTOOLS_IN_SOURCE_BUILD=1
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inherit autotools-utils distutils-r1 multilib perl-module toolchain-funcs
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DESCRIPTION="RNA secondary structure prediction and comparison"
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HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA/"
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SRC_URI="http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${PV}.tar.gz"
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SLOT="0"
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LICENSE="vienna-rna"
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KEYWORDS="~amd64 ~ppc ~x86"
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IUSE="doc openmp python static-libs"
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REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
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RDEPEND="
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dev-lang/perl
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media-libs/gd
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doc? ( dev-texlive/texlive-latex )
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python? ( ${PYTHON_DEPS} )"
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DEPEND="${RDEPEND}
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python? ( dev-lang/swig:0 )"
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S="${WORKDIR}/ViennaRNA-${PV}"
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PATCHES=(
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"${FILESDIR}"/${P}-bindir.patch
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"${FILESDIR}"/${PN}-2.1.1-prll.patch
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"${FILESDIR}"/${PN}-2.1.1-impl-decl.patch
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)
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src_prepare() {
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sed -i 's/ getline/ v_getline/' Readseq/ureadseq.c || die
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sed -i 's/@PerlCmd@ Makefile.PL/& INSTALLDIRS=vendor/' interfaces/Perl/Makefile.am || die
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autotools-utils_src_prepare
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if use python; then
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cd interfaces/Python || die
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local PATCHES=()
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distutils-r1_src_prepare
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fi
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}
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src_configure() {
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local myeconfargs=(
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--with-cluster
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$(use_enable openmp)
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)
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use doc || \
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myeconfargs+=(
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--without-doc-pdf
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--without-doc-html
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--without-doc
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)
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autotools-utils_src_configure
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sed \
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-e "s:CC=gcc:CC=$(tc-getCC):" \
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-e "s:^CFLAGS=:CFLAGS=${CFLAGS}:" \
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-i Readseq/Makefile || die
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if use python; then
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cd interfaces/Python || die
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distutils-r1_src_configure
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fi
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}
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src_compile() {
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autotools-utils_src_compile
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autotools-utils_src_compile -C Readseq build CC=$(tc-getCC)
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# TODO: Add (optional?) support for the NCBI toolkit.
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if use python; then
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cd interfaces/Python || die
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emake RNA_wrap.c
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distutils-r1_src_compile
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fi
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}
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src_test() {
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autotools-utils_src_compile -C interfaces/Perl check
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use python && autotools-utils_src_compile -C interfaces/Python check
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autotools-utils_src_compile -C Readseq test
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}
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src_install() {
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autotools-utils_src_install
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if ! use static-libs; then
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rm -f "${ED}"/usr/$(get_libdir)/*.a || die
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fi
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newbin Readseq/readseq readseq-vienna
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dodoc Readseq/Readseq.help
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newdoc Readseq/Readme README.readseq
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newdoc Readseq/Formats Formats.readseq
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# remove perlocal.pod to avoid file collisions (see #240358)
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perl_delete_localpod || die "Failed to remove perlocal.pod"
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if use python; then
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cd interfaces/Python || die
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distutils-r1_src_install
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fi
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}
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