39 lines
1,019 B
Bash
39 lines
1,019 B
Bash
# Copyright 1999-2013 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-2.4.ebuild,v 1.1 2013/03/11 15:25:21 jlec Exp $
|
|
|
|
EAPI=5
|
|
|
|
EANT_BUILD_TARGET="dist"
|
|
EANT_NEEDS_TOOLS="true"
|
|
JAVA_ANT_REWRITE_CLASSPATH="true"
|
|
|
|
inherit java-pkg-2 java-ant-2 vcs-snapshot
|
|
|
|
DESCRIPTION="The Genome Analysis Toolkit"
|
|
HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
|
|
SRC_URI="https://github.com/broadgsa/gatk/archive/${PV}.tar.gz -> ${P}.tar.gz"
|
|
|
|
LICENSE="MIT"
|
|
SLOT="0"
|
|
IUSE=""
|
|
KEYWORDS="~amd64"
|
|
|
|
COMMON_DEPS=""
|
|
DEPEND="
|
|
>=virtual/jdk-1.6
|
|
${COMMON_DEPS}"
|
|
RDEPEND="
|
|
>=virtual/jre-1.6
|
|
${COMMON_DEPS}"
|
|
|
|
src_prepare() {
|
|
sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die
|
|
java-pkg-2_src_prepare
|
|
}
|
|
|
|
src_install() {
|
|
java-pkg_dojar dist/*.jar
|
|
java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar
|
|
java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar
|
|
}
|