gentoo-overlay/sci-biology/lagan/files/lagan-2.0-gcc-4.8.patch

Author: Andreas Tille <tille@debian.org>
LastChanged: Fri, 15 Nov 2013 10:31:20 +0100
Description: Fix some includes to build using gcc-4.8

--- a/src/utils/Glue.cpp
+++ b/src/utils/Glue.cpp
@@ -6,6 +6,7 @@
 #include <fstream>
 #include <iostream>
 #include <algorithm>
+#include <string.h>
 
 #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt"
 #define MAX_LINE_LENGTH 1024
--- a/src/glocal/score.cpp
+++ b/src/glocal/score.cpp
@@ -2,7 +2,7 @@
 #include<score.h>
 #include<leftinfluence.h>
 #include<rightinfluence.h>
-#include<fstream.h>
+#include<fstream>
 
 extern vector<class Score*> scoreFunctions[1<<(UPSTRANDBITS+DOWNSTRANDBITS+RELPOSBITS)];