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150 lines
3.8 KiB
150 lines
3.8 KiB
# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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PYTHON_COMPAT=( python3_{7,8,9} )
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DISTUTILS_USE_SETUPTOOLS=no
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inherit distutils-r1 multilib
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DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
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HOMEPAGE="https://salilab.org/modeller/"
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SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
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LICENSE="modeller"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="doc examples"
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SLOT="0"
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RESTRICT="mirror"
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DEPEND=">=dev-lang/swig-1.3"
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RDEPEND=""
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INPATH="${EPREFIX}"/opt/modeller${ver}
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QA_PREBUILT="/opt/*"
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pkg_setup() {
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case ${ARCH} in
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x86)
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EXECTYPE="i386-intel8";;
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amd64)
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EXECTYPE="x86_64-intel8";;
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*)
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die "Your arch "${ARCH}" does not appear supported at this time.";;
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esac
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}
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python_prepare_all() {
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sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
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rm -rf modlib/modeller/python_library || die
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sed -i '1 i\#!/usr/bin/python' bin/modslave.py || die
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2to3 -w -n modlib/modeller || die
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distutils-r1_python_prepare_all
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}
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python_compile() {
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cd src/swig || die
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swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
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distutils-r1_python_compile
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}
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python_install() {
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cd src/swig || die
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distutils-r1_python_install
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}
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python_install_all() {
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cd "${S}" || die
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sed \
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-e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
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-e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
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-i bin/modscript || die
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sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
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-e "s;@EXETYPE\@;${EXECTYPE};" \
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bin/modpy.sh.in > "${T}/modpy.sh"
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insinto ${INPATH}
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doins -r modlib
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python_foreach_impl python_domodule modlib/modeller
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insinto ${INPATH}/bin
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doins -r bin/{lib,*top}
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exeinto ${INPATH}/bin
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doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
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python_foreach_impl python_doscript bin/modslave.py
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dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
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dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
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exeinto ${INPATH}/lib/${EXECTYPE}/
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doexe lib/${EXECTYPE}/lib*
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dosym libmodeller.so.12 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
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dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.12 /usr/$(get_libdir)/libmodeller.so.12
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use doc && HTML_DOCS=( doc/. )
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distutils-r1_python_install_all
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if use examples; then
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insinto /usr/share/${PN}/
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doins -r examples
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fi
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insinto /etc/revdep-rebuild
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cat >> "${T}"/40-${PN} <<- EOF
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SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
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EOF
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doins "${T}"/40-${PN}
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}
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pkg_postinst() {
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if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
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echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
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fi
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if grep -q license ${INPATH}/modlib/modeller/config.py; then
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einfo "A license key file is already present in ${INPATH}/modlib/modeller/config.py"
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else
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ewarn "Obtain a license Key from"
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ewarn "http://salilab.org/modeller/registration.html"
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ewarn "And run this before using modeller:"
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ewarn "emerge --config =${CATEGORY}/${PF}"
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ewarn "That way you can [re]enter your license key."
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fi
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}
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pkg_postrm() {
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ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
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ewarn "that you need to remove to completely get rid of modeller."
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}
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pkg_config() {
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ewarn "Your license key is NOT checked for validity here."
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ewarn " Make sure you type it in correctly."
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eerror "If you CTRL+C out of this, modeller will not run!"
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while true
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do
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einfo "Please enter your license key:"
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read license_key1
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einfo "Please re-enter your license key:"
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read license_key2
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if [[ "$license_key1" == "" ]]
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then
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echo "You entered a blank license key. Try again."
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else
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if [[ "$license_key1" == "$license_key2" ]]
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then
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echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
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einfo "Thank you!"
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break
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else
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eerror "Your license key entries do not match. Try again."
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fi
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fi
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done
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}
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