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376 lines
18 KiB
376 lines
18 KiB
--- a/squid/Makefile
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+++ b/squid/Makefile
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@@ -19,7 +19,6 @@
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# On an Alliant, use fxc.
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#
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#CC = cc
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-CC = gcc
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#CC = fxc
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## Any special compiler flags you want.
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@@ -37,7 +36,6 @@
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# for instance. If the code builds cleanly but seg faults, try
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# rebuilding without optimization.
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#
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-CFLAGS = -O
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#CFLAGS = -g
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#CFLAGS = -TARG:exc_max -64 -Ofast=ip27 #specific SGI Origin200 compiler#
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@@ -47,8 +45,6 @@
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# Don't worry. The Makefile tests for ranlib existence and will work
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# fine on SGIs even if RANLIB is set.
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#
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-AR = ar rcv
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-RANLIB = ranlib
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## Machine specific definitions
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#
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@@ -108,41 +104,41 @@
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all: $(LIBTARGET)
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alistat: $(OBJ) alistat_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o alistat $(OBJ) alistat_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o alistat $(OBJ) alistat_main.o $(LIBS)
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compalign: $(OBJ) compalign_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o compalign $(OBJ) compalign_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o compalign $(OBJ) compalign_main.o $(LIBS)
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compstruct: $(OBJ) compstruct_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o compstruct $(OBJ) compstruct_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o compstruct $(OBJ) compstruct_main.o $(LIBS)
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getseq: $(OBJ) getseq_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o getseq $(OBJ) getseq_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o getseq $(OBJ) getseq_main.o $(LIBS)
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reformat: $(OBJ) reformat_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o reformat $(OBJ) reformat_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o reformat $(OBJ) reformat_main.o $(LIBS)
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revcomp: $(OBJ) revcomp_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o revcomp $(OBJ) revcomp_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o revcomp $(OBJ) revcomp_main.o $(LIBS)
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seqstat: $(OBJ) seqstat_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o seqstat $(OBJ) seqstat_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o seqstat $(OBJ) seqstat_main.o $(LIBS)
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seqsplit: $(OBJ) seqsplit_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o seqstat $(OBJ) seqsplit_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o seqstat $(OBJ) seqsplit_main.o $(LIBS)
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shuffle: $(OBJ) shuffle_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o shuffle $(OBJ) shuffle_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o shuffle $(OBJ) shuffle_main.o $(LIBS)
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translate: $(OBJ) translate_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o translate $(OBJ) translate_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o translate $(OBJ) translate_main.o $(LIBS)
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weight: $(OBJ) weight_main.o
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- $(CC) $(CFLAGS) $(MDEFS) -o weight $(OBJ) weight_main.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) -o weight $(OBJ) weight_main.o $(LIBS)
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$(LIBTARGET): $(OBJ)
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- $(AR) $(LIBTARGET) $(OBJ)
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+ $(AR) rcv $(LIBTARGET) $(OBJ)
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-if test -x /bin/ranlib; then /bin/ranlib $(LIBTARGET); else exit 0; fi
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-if test -x /usr/bin/ranlib; then /usr/bin/ranlib $(LIBTARGET); else exit 0; fi
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-if test -x $(RANLIB); then $(RANLIB) $(LIBTARGET); else exit 0; fi
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@@ -182,4 +178,4 @@
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etags -t $(SRC) $(HDRS)
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.c.o:
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- $(CC) $(CFLAGS) $(MDEFS) -c $<
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -c $<
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--- a/squid02/Makefile
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+++ b/squid02/Makefile
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@@ -27,8 +27,6 @@
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## your compiler and compiler flags
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#
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-CC = gcc
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-CFLAGS = -g -O2
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## other defined flags for machine-specific stuff
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#
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@@ -37,8 +35,6 @@
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## Archiver command
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#
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-AR = ar rcv
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-RANLIB = ranlib
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## instructions for installing man pages
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#
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@@ -158,10 +154,10 @@
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all: version.h $(PROGS) libsquid.a
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$(PROGS): %: %_main.o version.h $(OBJS)
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- $(CC) $(CFLAGS) $(MDEFS) $(PVMLIBDIR) -o $@ $@_main.o $(OBJS) $(PVMLIBS) $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) $(MDEFS) $(PVMLIBDIR) -o $@ $@_main.o $(OBJS) $(PVMLIBS) $(LIBS)
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.c.o:
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- $(CC) $(CFLAGS) $(PVMFLAG) $(PVMINCDIR) $(MDEFS) -c $<
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(PVMFLAG) $(PVMINCDIR) $(MDEFS) -c $<
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################################################################
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@@ -172,7 +168,7 @@
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module: libsquid.a
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libsquid.a: version.h $(OBJS)
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- $(AR) libsquid.a $(OBJS)
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+ $(AR) rcv libsquid.a $(OBJS)
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$(RANLIB) libsquid.a
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chmod 644 libsquid.a
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#################################################################
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--- a/src/Makefile
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+++ b/src/Makefile
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@@ -21,7 +21,6 @@
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SQUIDSRCDIR02 = ../squid02
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## your compiler
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-CC = gcc
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#CC = cc
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## any special compiler flags you want
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@@ -30,7 +29,6 @@
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#CFLAGS = -g -Wall -pedantic
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#CFLAGS = -TARG:exc_max
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#CFLAGS = -g -fullwarn -wlint,-fviah
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-CFLAGS = -O
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#CFLAGS = -p # profiling #
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#CFLAGS = -64 -Ofast=ip27 #specific warhorse compiler#
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@@ -131,145 +129,145 @@
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all: $(PROGS)
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main: $(OBJ) main.o
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- $(CC) $(CFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(LIBS)
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cfgbuild: $(OBJ) cfgbuild.o
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- $(CC) $(CFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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eqrna: $(OBJ) eqrna.o
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- $(CC) $(CFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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eqrna_sample: $(OBJ) eqrna_sample.o
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- $(CC) $(CFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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shuffle: $(OBJ) shuffle.o
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- $(CC) $(CFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ -L$(SQUIDDIR) $@.o $(OBJ) $(LIBS)
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rnamat_main: $(OBJ2) rnamat_main.o
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- $(CC) $(CFLAGS) -o $@ -L$(SQUIDDIR02) $@.o $(OBJ2) $(LIBS)
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+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ -L$(SQUIDDIR02) $@.o $(OBJ2) $(LIBS)
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main.o: ../src/main.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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cfgbuild.o: ../src/cfgbuild.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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eqrna.o: ../src/eqrna.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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eqrna_sample.o: ../src/eqrna_sample.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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shuffle.o: ../src/shuffle.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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rnamat_main.o: ../src/rnamat_main.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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cfgio.o: ../src/cfgio.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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cfgmodel.o: ../src/cfgmodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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cfgparse.o: ../src/cfgparse.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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codcreatealign.o: ../src/codcreatealign.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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coddp.o: ../src/coddp.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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coddpscanfast.o: ../src/coddpscanfast.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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codmodel.o: ../src/codmodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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codon.o: ../src/codon.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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codscorealign.o: ../src/codscorealign.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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er_math.o: ../src/er_math.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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er_vectop.o: ../src/er_vectop.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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evd.o: ../src/evd.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolcodmodel.o: ../src/evolcodmodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolemissions.o: ../src/evolemissions.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolmisc.o: ../src/evolmisc.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolnullmodel.o: ../src/evolnullmodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolothmodel.o: ../src/evolothmodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolqrnaversion.o: ../src/evolqrnaversion.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolscorewithmodels.o: ../src/evolscorewithmodels.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolscorewithmodelscanfast.o: ../src/evolscorewithmodelscanfast.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolriboprob.o: ../src/evolriboprob.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolrnadp.o: ../src/evolrnadp.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolrnadpscanfast.o: ../src/evolrnadpscanfast.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolrnamodel.o: ../src/evolrnamodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolrnascorealign.o: ../src/evolrnascorealign.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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evolve.o: ../src/evolve.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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globals.o: ../src/globals.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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hexamer.o: ../src/hexamer.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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matrix.o: ../src/matrix.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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misc.o: ../src/misc.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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nrnscfg.o: ../src/nrnscfg.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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nstack.o: ../src/nstack.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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nullmodel.o: ../src/nullmodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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othcreatealign.o: ../src/othcreatealign.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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othdp.o: ../src/othdp.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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othdpscanfast.o: ../src/othdpscanfast.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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othmodel.o: ../src/othmodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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othscorealign.o: ../src/othscorealign.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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posterior.o: ../src/posterior.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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qrnaversion.o: ../src/qrnaversion.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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riboprob.o: ../src/riboprob.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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rnacreatealign.o: ../src/rnacreatealign.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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rnadp.o: ../src/rnadp.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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rnadpscanfast.o: ../src/rnadpscanfast.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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rnaio.o: ../src/rnaio.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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rnamat.o: ../src/rnamat.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR02) -c $?
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rnamodel.o: ../src/rnamodel.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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rnaoutput.o: ../src/rnaoutput.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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|
rnascorealign.o: ../src/rnascorealign.c
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- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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|
rnascfg.o: ../src/rnascfg.c
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|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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|
rnascfgscanfast.o: ../src/rnascfgscanfast.c
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
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|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
scorewithmodels.o: ../src/scorewithmodels.c
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
scorewithmodelscanfast.o: ../src/scorewithmodelscanfast.c
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
seqio.o: ../src/seqio.c
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
trace.o: ../src/trace.c
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
traceSCFG.o: ../src/traceSCFG.c
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
tying.o: ../src/tying.c
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $?
|
|
|
|
|
|
install: $(PROGS)
|
|
@@ -313,10 +311,10 @@
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|
/usr/lib/lint/llib-lm.ln
|
|
|
|
.c.o:
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $<
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $<
|
|
|
|
.m.o:
|
|
- $(CC) $(CFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $<
|
|
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(MDEFS) -I$(SQUIDDIR) -c $<
|
|
|
|
|
|
|