gentoo-overlay/sci-biology/dialign-tx/files/dialign-tx-1.0.2-fix-build-system.patch

--- a/source/Makefile
+++ b/source/Makefile
@@ -1,4 +1,3 @@
-CC=gcc
 # debug
 #CPPFLAGS=-g -O0 -Q -v -da
 #CPPFLAGS=-g -O0 -fstack-check -Q -v -da
@@ -8,7 +7,6 @@
 # THIS IS FOR THE OPTIMIZED ONE
 #CPPFLAGS=-g 
 #CPPFLAGS=-O3 -march=i686 -funroll-loops
-CPPFLAGS=-O3 -funroll-loops -march=i686 -mfpmath=sse -msse  -mmmx
 #CPPFLAGS=-march=athlon-mp -g -O0 -Wall -D_USE_XOPEN -D__unix__
 
 OBJ_DIR=.
@@ -33,7 +31,7 @@
 
 museq:	$(OBJ)
 	rm -f $(TARGET)/$@
-	$(CC) -o $(TARGET)/$@ \
+	$(CC) $(LDFLAGS) -o $(TARGET)/$@ \
 	$(OBJ) \
 	-pipe -Wall -lm 
 	mv museq dialign-tx