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290 lines
9.9 KiB
290 lines
9.9 KiB
9 years ago
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# ChangeLog for sci-biology/bioperl
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.60 2015/06/13 19:19:59 dilfridge Exp $
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13 Jun 2015; Andreas K. Huettel <dilfridge@gentoo.org> bioperl-1.6.9.ebuild,
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bioperl-9999-r1.ebuild:
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Module::Build is no longer part of core Perl and has been moved to dev-perl
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27 May 2015; Justin Lecher <jlec@gentoo.org> -bioperl-1.6.0-r2.ebuild:
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Drop old
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27 May 2015; Agostino Sarubbo <ago@gentoo.org> bioperl-1.6.9.ebuild:
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Stable for amd64, wrt bug #539426
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26 Apr 2015; Pacho Ramos <pacho@gentoo.org> bioperl-1.6.9.ebuild:
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x86 stable wrt bug #539426
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18 Apr 2015; Andreas K. Huettel <dilfridge@gentoo.org> bioperl-1.6.9.ebuild:
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Use REQUIRED_USE instead of dieing on invalid use-flag combination, bug
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547022
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08 Apr 2015; Justin Lecher <jlec@gentoo.org> bioperl-1.6.9.ebuild,
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bioperl-9999-r1.ebuild, metadata.xml:
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Add missing deps, bug #545472
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09 Aug 2014; Mikle Kolyada <zlogene@gentoo.org> bioperl-1.6.0-r2.ebuild,
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bioperl-1.6.9.ebuild, bioperl-9999-r1.ebuild:
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Bump to EAPI=5 (bug #478714)
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10 Jul 2014; Andreas K. Huettel <dilfridge@gentoo.org> bioperl-1.6.9.ebuild:
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Depend on virtual/perl-x instead of perl-core/x
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28 Oct 2012; Justin Lecher <jlec@gentoo.org> -bioperl-1.5.1-r1.ebuild,
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-bioperl-1.6.1.ebuild:
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Drop versions with unsolvable dep sets
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12 Apr 2012; Torsten Veller <tove@gentoo.org> metadata.xml:
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Fix cpan distribution in metadata.xml
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24 Mar 2012; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
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Drop alpha/ia64/sparc keywords
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20 Sep 2011; Michał Górny <mgorny@gentoo.org> bioperl-9999-r1.ebuild:
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Migrate to git-2.
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*bioperl-1.6.9 (18 Jul 2011)
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18 Jul 2011; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.4.ebuild,
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+bioperl-1.6.9.ebuild:
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Version bump, drop old
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*bioperl-9999-r1 (17 Oct 2010)
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17 Oct 2010; Andrey Kislyuk <weaver@gentoo.org> -bioperl-9999.ebuild,
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+bioperl-9999-r1.ebuild:
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Update live ebuild for upstream svm->github migration, bug 338362. Thanks
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to Joel Berendzen
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02 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild:
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Fix typo
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01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild:
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Fix typo
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*bioperl-1.6.1 (01 Oct 2009)
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01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.1.ebuild:
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Version bump
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11 Jun 2009; Markus Meier <maekke@gentoo.org> bioperl-1.6.0-r2.ebuild:
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amd64 stable, bug #270585
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02 Jun 2009; Christian Faulhammer <fauli@gentoo.org>
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bioperl-1.6.0-r2.ebuild:
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stable x86, bug 270585
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24 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild,
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bioperl-9999.ebuild:
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Moved Bio-ASN1-EntrezGene to PDEPEND per bug 269583
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13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-9999.ebuild:
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Override depend on perl 5.10
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13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild,
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bioperl-9999.ebuild:
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Remove module-build from RDEPEND (bug 246942)
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*bioperl-1.6.0-r2 (08 Apr 2009)
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08 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0-r1.ebuild,
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+bioperl-1.6.0-r2.ebuild, bioperl-9999.ebuild:
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Revision bump - add missing dependencies
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24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
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Giving up maintainership of this package.
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*bioperl-9999 (16 Mar 2009)
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*bioperl-1.6.0-r1 (16 Mar 2009)
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16 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0.ebuild,
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+bioperl-1.6.0-r1.ebuild, +bioperl-9999.ebuild:
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Rewrite, commit split 1.6.0 packages and live ebuilds for packages in 1.6.0
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release. Bug 179110.
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*bioperl-1.6.0 (12 Mar 2009)
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12 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.0.ebuild:
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Testing release for revision bump
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15 Jul 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
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x86 stable wrt #222727
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06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
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bioperl-1.5.1-r1.ebuild:
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Stable on amd64.
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06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
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bioperl-1.5.1-r1.ebuild:
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Fixed test suite.
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06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
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bioperl-1.5.1-r1.ebuild:
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Fixed dependency on io_lib.
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02 Jan 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
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Re-add ~alpha/~ia64
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10 Dec 2006; Olivier Fisette <ribosome@gentoo.org>
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bioperl-1.5.1-r1.ebuild:
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Fixed Perl dependencies (see bug #157672).
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22 Oct 2006; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild,
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-bioperl-1.5.1.ebuild, bioperl-1.5.1-r1.ebuild:
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Fixed description. Removed old ebuild.
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30 Sep 2006; Jason Wever <weeve@gentoo.org> bioperl-1.5.1.ebuild,
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bioperl-1.5.1-r1.ebuild:
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Added ~sparc keyword wrt bug #149577.
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30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
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bioperl-1.5.1-r1.ebuild:
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Fixing dependency on io_lib (thanks to Weeve for pointing this out).
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*bioperl-1.5.1-r1 (30 Sep 2006)
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30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
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+bioperl-1.5.1-r1.ebuild:
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Added dependency on io_lib for the Staden extensions. Dropping ~alpha, ~ia64
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and ~sparc keywords (see bug #149577).
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*bioperl-1.5.1 (13 Sep 2006)
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13 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +bioperl-1.5.1.ebuild:
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New upstream version. Thanks to Greg Wilson <gdw1@cornell.edu>, Martin
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Mokrejs <mmokrejs@ribosome.natur.cuni.cz> and Neil Shephard
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<nshephard@gmail.com> for their work (see bug #79459).
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18 Aug 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
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Marking amd64 stable
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30 Mar 2006; Aron Griffis <agriffis@gentoo.org> bioperl-1.4.ebuild:
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Mark 1.4 ~ia64
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13 Feb 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
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Virtuals for perl-core
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28 Nov 2005; <mcumming@gentoo.org> bioperl-1.0.2.ebuild,
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bioperl-1.2.2.ebuild, bioperl-1.2.3.ebuild, bioperl-1.2.ebuild,
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bioperl-1.4.ebuild:
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Switched from perl-module to perl-app eclass
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19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
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Maintainer changed from Stephen Diener (MIA) to Olivier Fisette.
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05 Aug 2005; Herbie Hopkins <herbs@gentoo.org> bioperl-1.4.ebuild:
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Marked ~amd64 wrt bug #101339.
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
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dev-perl/Storable => perl-core/Storable migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild:
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dev-perl/Storable => perl-core/Storable migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild:
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dev-perl/Storable => perl-core/Storable migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild:
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dev-perl/Storable => perl-core/Storable migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild:
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dev-perl/Storable => perl-core/Storable migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
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dev-perl/File-Temp => perl-core/File-Temp migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild:
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dev-perl/File-Temp => perl-core/File-Temp migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild:
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dev-perl/File-Temp => perl-core/File-Temp migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild:
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dev-perl/File-Temp => perl-core/File-Temp migration
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25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild:
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dev-perl/File-Temp => perl-core/File-Temp migration
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30 Mar 2005; Gustavo Zacarias <gustavoz@gentoo.org> bioperl-1.4.ebuild:
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Keyworded ~sparc
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09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild:
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Added regression test support. Fixes bug #38169.
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29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
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Change encoding to UTF-8 for GLEP 31 compliance
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*bioperl-1.2 (23 Dec 2004)
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23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
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+files/biodbgff-enable-1.2.2.patch, +files/biodbgff-enable-1.2.3.patch,
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+files/bioperl-1.2-manpage.diff, +files/domanpages-1.2.2.patch,
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+bioperl-1.0.2.ebuild, +bioperl-1.2.2.ebuild, +bioperl-1.2.3.ebuild,
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+bioperl-1.2.ebuild, +bioperl-1.4.ebuild:
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Moved from app-sci/bioperl to sci-biology/bioperl.
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30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild,
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bioperl-1.0.2.ebuild:
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Q.A.: Fixed RDEPEND=$DEPEND, fixed LICENSE.
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03 Aug 2004; David Holm <dholm@gentoo.org> bioperl-1.4.ebuild:
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Added to ~ppc.
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03 Jul 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild:
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Stable on alpha.
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02 Jun 2004; Aron Griffis <agriffis@gentoo.org> bioperl-1.2.2.ebuild,
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bioperl-1.2.3.ebuild:
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Fix use invocation
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05 May 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
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bumped 1.4 to stable
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05 May 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.2.ebuild:
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Stable on alpha.
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20 Apr 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild:
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Added ~alpha to keywords.
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14 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
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removed src_test; fixes bug #38169, or at least works around it
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*bioperl-1.4 (08 Jan 2004)
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08 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
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version bump
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24 Nov 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.3.ebuild:
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bump to stable.
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*bioperl-1.2.3 (24 Oct 2003)
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24 Oct 2003; <sediener@gentoo.org> bioperl-1.2.3.ebuild:
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new release added.
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*bioperl-1.2.2 (28 Aug 2003)
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28 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild:
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Bumped to stable x86
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*bioperl-1.2.2 (02 Aug 2003)
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02 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild,
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files/biodbgff-enable-1.2.2.patch, files/domanpages-1.2.2.patch:
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New Version thanks to Gontran Zepeda <gontran@gontran.net> in bug# 24467 :
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Also fixes bug# 25079
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*bioperl-1.2 (24 Apr 2003)
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24 Apr 2003; Jon Portnoy <avenj@gentoo.org> bioperl-1.2.ebuild :
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Version bump, ebuild submitted by Gontran Zepeda <gontran@gontran.net>
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in bug #13826
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*bioperl-1.0.2 (21 Dec 2002)
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21 Dec 2002; Michael Cummings <mcummings@gentoo.org>
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bioperl-1.0.2.ebuild:
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Initial import. Ebuild submitted by Gontran Zepeda <gontran@gontran.net>
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Bug 11498
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