gentoo-overlay/sci-biology/mothur/files/mothur-1.27.0-makefile.patch

 makefile |   14 ++++++--------
 1 files changed, 6 insertions(+), 8 deletions(-)

diff --git a/makefile b/makefile
index db7c904..109488f 100644
--- a/makefile
+++ b/makefile
@@ -10,18 +10,18 @@
 #
 
 USEMPI ?= no
-64BIT_VERSION ?= yes
+64BIT_VERSION ?= no
 USEREADLINE ?= yes
 CYGWIN_BUILD ?= no
 USECOMPRESSION ?= no
 MOTHUR_FILES="\"Enter_your_default_path_here\""
 RELEASE_DATE = "\"8/8/2012\""
 VERSION = "\"1.27.0\""
-FORTAN_COMPILER = gfortran
-FORTRAN_FLAGS = 
+FORTAN_COMPILER = ${FC}
+FORTRAN_FLAGS = ${FCFLAGS}
 
 # Optimize to level 3:
-CXXFLAGS += -O3 
+#CXXFLAGS += -O3
 
 ifeq  ($(strip $(64BIT_VERSION)),yes)
 	#if you are using centos uncomment the following lines
@@ -69,7 +69,7 @@ endif
 
 
 ifeq  ($(strip $(USEMPI)),yes)
-    CXX = mpic++
+#    CXX = mpic++
     CXXFLAGS += -DUSE_MPI
 endif
 
@@ -95,11 +95,9 @@ OBJECTS=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
 OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
 OBJECTS+=$(patsubst %.f,%.o,$(wildcard *.f))
 
-mothur : fortranSource $(OBJECTS) uchime
+mothur : fortranSource $(OBJECTS)
 	$(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
 	
-	strip mothur
- 
 uchime:
 	cd uchime_src && ./mk && mv uchime .. && cd ..